Despite the latest fix in changeset 59979 I still have problems with apps not showing up. It appears to be because the module names aren't always the same case. I modified my copy of the source code so that the lines that are inside the if statements like:
module.szModule.Contains("PresentationFramework") are instead like:
module.szModule.StartsWith("PresentationFramework", StringComparison.OrdinalIgnoreCase)

I did that for all three checks in both locations modified by the changeset.